PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P15910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 317aa    MW: 35324.8 Da    PI: 9.5698
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P15910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.7e-151979257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ +++V++WFqNrR + ++
  GSMUA_Achr6P15910_001 19 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 79
                           89*****************99*************************************997 PP
2Wus_type_Homeobox106.91.2e-341881265
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                           +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  GSMUA_Achr6P15910_001 18 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 81
                           589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.3531580IPR001356Homeobox domain
SMARTSM003892.1E-61784IPR001356Homeobox domain
SuperFamilySSF466891.33E-131785IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-81984IPR009057Homeodomain-like
PfamPF000463.4E-131979IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDGRNGSPNR GLAGAEPVRS RWTPKPEQIL ILESIFNSGM VNPPKDETVR IRKLLEKFGS  60
VGDANVFYWF QNRRSRSRRR QRQLQAAGLA ADPGAAMHAR QVGGAALYEP TSTGILVGDD  120
GGADDLFFSR QMGFMENLLT HITTKLGLYL LFGSRIRQLD KKDYVDLKAN DLCFSAQLKA  180
APSFGVRKKH HAKDYFEAIT SEILSSPTAC LNAGTITVFI NGIPSEVPRG PIDLRAMFGQ  240
NVMLVHSSGE LLPINEYGIL LQSLQMGESY FLVSFSKQLM LLISISLSLS LSRCVCTCVY  300
THIFMFIRRT RHTPWCE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404684.11e-108PREDICTED: WUSCHEL-related homeobox 6-like isoform X1
TrEMBLM0T7D90.0M0T7D9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P15910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-52WUSCHEL related homeobox 12