PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P16480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 164aa    MW: 18930.7 Da    PI: 8.5858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P16480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-1068115455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  GSMUA_Achr6P16480_001  68 SHSLAERVRREKISERMKVLQSLVPGC-----EKvTGKALMLDEIINYVQSLQ 115
                            8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1862132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-1062119No hitNo description
PROSITE profilePS5088815.61864114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1765129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-768115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1070120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MYSNKKLVEF KHIYFDPNYE GKICKQRRLR ETDDKKPKAD DTKASKTCGE SPAGYIHVRA  60
RRGEATDSHS LAERVRREKI SERMKVLQSL VPGCEKVTGK ALMLDEIINY VQSLQNQVEF  120
LSMKLASLNP MLYFDADSDE YMSQPESVTS FCNYLARFEL PKSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405249.15e-89PREDICTED: transcription factor BEE 1 isoform X1
SwissprotQ93W882e-48BH137_ARATH; Transcription factor bHLH137
TrEMBLM0T7J61e-119M0T7J6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P16480_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]