PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P16560_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 247aa MW: 27636 Da PI: 8.6705

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P16560_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.3	1.3e-48	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yLk+k+ + +l++ +i+e+++ +++PwdLp + e+e yfF r+ ky++g+r+nra++sgyWkatgk GSMUA_Achr6P16560_001 16 LPPGFRFHPTDEELVVQYLKRKAFSCPLPA-AIIPEINLARLDPWDLPG---GCEEERYFFNLREAKYPRGSRSNRAARSGYWKATGK 99 79*************************9.88***********4...356899************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++s+ ++ +vg++k+Lvfy+g+ p+g+ktdW+mheyrl GSMUA_Achr6P16560_001 100 DKQITSSwcSQVVVGMRKVLVFYRGKPPTGTKTDWIMHEYRL 141 **9988999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-57	11	176	IPR003441	NAC domain
PROSITE profile	PS51005	55.588	16	176	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDRKPSAVAR HGVLRLPPGF RFHPTDEELV VQYLKRKAFS CPLPAAIIPE INLARLDPWD 60 LPGGCEEERY FFNLREAKYP RGSRSNRAAR SGYWKATGKD KQITSSWCSQ VVVGMRKVLV 120 FYRGKPPTGT KTDWIMHEYR LAGPETRPCI FPQRKNSTHS SVDPSGDWVL CRIFRKKRAT 180 KMEVGTDEAG EEDEDPITRD GFIDFMGQRG GDQSHSTSCS SGSSCVTDHS DGSSSTGEET 240 SSSRSLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-51	14	181	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-51	14	181	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-51	14	181	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-51	14	181	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	14	181	18	173	NAC domain-containing protein 19
3swm_B	1e-50	14	181	18	173	NAC domain-containing protein 19
3swm_C	1e-50	14	181	18	173	NAC domain-containing protein 19
3swm_D	1e-50	14	181	18	173	NAC domain-containing protein 19
3swp_A	1e-50	14	181	18	173	NAC domain-containing protein 19
3swp_B	1e-50	14	181	18	173	NAC domain-containing protein 19
3swp_C	1e-50	14	181	18	173	NAC domain-containing protein 19
3swp_D	1e-50	14	181	18	173	NAC domain-containing protein 19
4dul_A	8e-51	14	181	15	170	NAC domain-containing protein 19
4dul_B	8e-51	14	181	15	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FM878720	4e-88	FM878720.1 Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone MAC4-59B19-F.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009404749.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-72	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	M0T7K4	0.0	M0T7K4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P16560_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6317	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-66	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]