PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P16880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 457aa    MW: 50473 Da    PI: 5.312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P16880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.54.1e-92604542373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl..fs 85 
                            ++lL+++A+a++s+d++laq++L+ l+++a pdgd +qRl++ f++AL ar +r  + ++  a+++++++e   + ++++a  l  f 
  GSMUA_Achr6P16880_001  60 EQLLIHFANAIESNDATLAQQILWVLNNIAPPDGDCNQRLTSAFLRALVARASRtGSCKILTAVAARADAELAlHLHRFSAIDLanFI 147
                            79****************************************************32334555555555554336666666666699** PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfA 169
                            +++P+++f++ +aN aI eaveg   vHi+D++ ++++Q p+L++ La+Rpegpp +R+T+ g  ++      + ++ e+g+rL +fA
  GSMUA_Achr6P16880_001 148 DLTPWHRFGYAAANAAIAEAVEGLPLVHIVDLSTTHCMQMPTLIDLLANRPEGPPFIRLTVSGLTTTAappiLNMTYDELGSRLVNFA 235
                            ************************************************************99998877888889999*********** PP

                   GRAS 170 eelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrll...........desvsleserdevLklvkslsPkvv 239
                            ++ +v +ef v+        ++ +e+l++++L v++gEal+Vn+++ lh+++           + s ++ s r+ +Lk+++sl P++v
  GSMUA_Achr6P16880_001 236 RSRNVAMEFVVIptdpsdaFVSLIEQLRVQQL-VSEGEALIVNCQMLLHYIPeetvgviasttNVSPPMLSLRTLFLKALRSLGPTLV 322
                            ***********977766666666777777777.777****************99999998888888888889**************** PP

                   GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                            +vv+++ad ++ + ++r+ +a++y +  +d++++ lp+ se+r+++E+  +g++i+nv+a eg +r+er e++++W +r+++ GF++v
  GSMUA_Achr6P16880_001 323 TVVDEDADFTACDVVRRLRSAFNYLWIPYDAVDTFLPKGSEQRRWYEAG-VGWKIENVIAEEGVQRVERLERKGRWAQRMRATGFRSV 409
                            *************************************************.************************************** PP

                   GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            +++e+aa ++k++l +++  g+ ++ +++ l+l+Wk++++v+++aW
  GSMUA_Achr6P16880_001 410 RFTEEAAGEVKSMLDEHA-AGWGMKRDEEDLMLTWKGHNVVFATAW 454
                            ******************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.88133436IPR005202Transcription factor GRAS
PfamPF035141.4E-8960454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMQFTTSVPL LPPIGPDGLS LLLEEDDAPK PSLGGSWPWR GRLLASPKTL GSFNTASCME  60
QLLIHFANAI ESNDATLAQQ ILWVLNNIAP PDGDCNQRLT SAFLRALVAR ASRTGSCKIL  120
TAVAARADAE LALHLHRFSA IDLANFIDLT PWHRFGYAAA NAAIAEAVEG LPLVHIVDLS  180
TTHCMQMPTL IDLLANRPEG PPFIRLTVSG LTTTAAPPIL NMTYDELGSR LVNFARSRNV  240
AMEFVVIPTD PSDAFVSLIE QLRVQQLVSE GEALIVNCQM LLHYIPEETV GVIASTTNVS  300
PPMLSLRTLF LKALRSLGPT LVTVVDEDAD FTACDVVRRL RSAFNYLWIP YDAVDTFLPK  360
GSEQRRWYEA GVGWKIENVI AEEGVQRVER LERKGRWAQR MRATGFRSVR FTEEAAGEVK  420
SMLDEHAAGW GMKRDEEDLM LTWKGHNVVF ATAWLPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-534745672474Protein SHORT-ROOT
5b3h_B2e-534745618420Protein SHORT-ROOT
5b3h_E2e-534745618420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404781.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-163SCL32_ARATH; Scarecrow-like protein 32
TrEMBLM0T7N60.0M0T7N6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P16880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-157GRAS family protein