PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P16890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 136aa    MW: 15133.2 Da    PI: 9.4971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P16890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11601001055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  GSMUA_Achr6P16890_001  60 RKRRQRINERLRILQSLIPNG-----TKVDISTMLEEAVRYVKFLQ 100
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1865099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1550117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-1355112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-1156105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.49E-1259104No hitNo description
PfamPF000107.3E-960100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MNLHGSCCYS SEDDSNGSQE LKGAGATSCS SKGSAVMNPN ERKTRAGRGS ATDPQSLYAR  60
KRRQRINERL RILQSLIPNG TKVDISTMLE EAVRYVKFLQ LQIKLLSSEE LWMYAPIAYN  120
GMNLGFDLKI SPQSQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405253.12e-95PREDICTED: transcription factor bHLH84-like
SwissprotQ7XHI91e-52BH084_ARATH; Transcription factor bHLH84
TrEMBLM0T7N72e-96M0T7N7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P16890_0013e-97(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-55bHLH family protein