PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P17420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 207aa    MW: 23195.4 Da    PI: 9.1169
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P17420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.5e-3353109360
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                            +v+Y+eClkNhAas+Gg+a+DGCgEfmp  geegt +alkC+ACgCHRnFHR+e+e e
  GSMUA_Achr6P17420_001  53 GVKYRECLKNHAASIGGNATDGCGEFMPG-GEEGTLEALKCSACGCHRNFHRKETEGE 109
                            689*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-3054106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-3055105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2355107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.31356105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.43E-19135200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-29139201IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-26140195IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDLSGHEGEI PIPIKNTHDI SSSGPPPPLA TATMVDYHHH HNPYPYSTKK RLGVKYRECL  60
KNHAASIGGN ATDGCGEFMP GGEEGTLEAL KCSACGCHRN FHRKETEGES SWGCYHPLTA  120
RNAMNQRGLL LSGADAFGLK RLRTKFTPEQ KEKMLCFAEK VGWRLQKQEE SAVQQLCQEI  180
GVRRRVLKVW MHNNKHHLAK KSPSQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241401961874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2001632e-46EU200163.1 Asparagus officinalis zinc finger-homeodomain protein 1 (ZHD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404830.11e-148PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018683197.11e-148PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018683198.11e-148PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018683199.11e-148PREDICTED: zinc-finger homeodomain protein 4-like
RefseqXP_018683200.11e-148PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S02e-60ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLM0T7U01e-154M0T7U0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P17420_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.29e-63homeobox protein 31