PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P17630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 263aa    MW: 29667.2 Da    PI: 10.9613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P17630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171863147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ede+l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr6P17630_001 18 RGHWRPGEDERLRQLVQQFGPQNWNSIAEKLK-GRSGKSCRLRWFNQ 63
                           899****************************9.***********996 PP
2Myb_DNA-binding52.51.1e-1670113146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++T+eE+e+l+ a +  G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr6P17630_001  70 RRPFTEEEEERLLAAQQVQGNK-WALIARLFP-GRTDNAVKNHWHV 113
                            679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2411364IPR017930Myb domain
SMARTSM007174.4E-131766IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-2917111IPR009057Homeodomain-like
PfamPF002491.7E-161863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-261971IPR009057Homeodomain-like
CDDcd001676.48E-132162No hitNo description
PROSITE profilePS5129424.45165119IPR017930Myb domain
SMARTSM007171.1E-1369117IPR001005SANT/Myb domain
PfamPF002492.1E-1370112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2072117IPR009057Homeodomain-like
CDDcd001679.53E-681112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGSTSASAGS GDAKACPRGH WRPGEDERLR QLVQQFGPQN WNSIAEKLKG RSGKSCRLRW  60
FNQLDPRINR RPFTEEEEER LLAAQQVQGN KWALIARLFP GRTDNAVKNH WHVIMARRHR  120
ERSKLFRKSA IFPDQIHPVS APQEGSHRRH LRFGSDSDFR VVSPSGFMLW RAFSGSRDYP  180
STPKCSSGVL LDSSQLHGRS LRPHHQAYRS LSVDANCSDY AVSARDMARD GSDSANSRAI  240
SEQINDRSKK VAFIDFLGVG ITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-31181184104C-Myb DNA-Binding Domain
1msf_C2e-31181184104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404853.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLM0T7W10.0M0T7W1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P17630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-62myb domain protein 52