PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P17670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 193aa    MW: 21413.7 Da    PI: 5.2096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P17670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.11e-3781271128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            lppGf+F P+deelv ++L++k+   +++  ++i+++d+++++PwdL  k++++++++wyfF+++         ++rat++gyW+a g
  GSMUA_Achr6P17670_001   8 LPPGFQFFPSDEELVLHFLHRKAGLLPCHP-DIIPTIDLHHCDPWDLGgKALQGGNRHWYFFTHTT--------QSRATATGYWHAVG 86 
                            79*************************999.99**************8678889999*****9974........5799********** PP

                    NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +d+e ++++  +vg+kktL +y g+ap+g+kt+W+mhey+l
  GSMUA_Achr6P17670_001  87 TDHETIASSCVDVGVKKTLRYYLGEAPEGVKTNWLMHEYHL 127
                            ***99999999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-465155IPR003441NAC domain
PROSITE profilePS5100543.5078157IPR003441NAC domain
PfamPF023652.9E-239127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGEGSSSLPP GFQFFPSDEE LVLHFLHRKA GLLPCHPDII PTIDLHHCDP WDLGGKALQG  60
GNRHWYFFTH TTQSRATATG YWHAVGTDHE TIASSCVDVG VKKTLRYYLG EAPEGVKTNW  120
LMHEYHLLDD GVLHSTGDGG TRKKESNRWV VCRVYESTGG SQSSFHDDGG SELSCLDEVF  180
LSLDDIDEIS LPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-39716319174NAC domain-containing protein 19
3swm_B9e-39716319174NAC domain-containing protein 19
3swm_C9e-39716319174NAC domain-containing protein 19
3swm_D9e-39716319174NAC domain-containing protein 19
3swp_A9e-39716319174NAC domain-containing protein 19
3swp_B9e-39716319174NAC domain-containing protein 19
3swp_C9e-39716319174NAC domain-containing protein 19
3swp_D9e-39716319174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404855.11e-142PREDICTED: NAC domain-containing protein 104-like isoform X3
SwissprotQ8GWK62e-65NC104_ARATH; NAC domain-containing protein 104
TrEMBLM0T7W51e-141M0T7W5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P17670_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-68xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]