PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P17840_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 388aa MW: 42045.3 Da PI: 7.4548

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P17840_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	85.1	1.7e-26	1	67	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 ++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s+++ GSMUA_Achr6P17840_001 1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSSFSAPA 67 9**********************************************99976666666666333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.411	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-26	1	77	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNISLRSSG 60 SSFSAPASKS APLSFHALAL AHHRPDFELH QLLSADQIGE GLQGGVGSGG GDSTDTYLRK 120 RFRGDLFKDE QQTPPQHQEG GGGAGPSPPG ILPAAAMWAV APNSAAGGAF WMLPMSAGSA 180 APAVAAATGT IQAPLQFMSR QPTSGVAAQH LGLGTSETNL GMLAALNAYN RGGGLSMNSE 240 HHHPMDHHHQ AHTHQQQQSA DSDEDNHTMF FQLVKEYFHR FSFFYFCSIL LECCDFKNLI 300 CGSKWAARVG NKDLYRDPIR LCSIILCLFE REREREREEE RGQYTVCRCS PIKAISGRTF 360 LIRIVRGRTR GEGPCSSDPS HHVVSARR

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNISLRSSG  60
SSFSAPASKS APLSFHALAL AHHRPDFELH QLLSADQIGE GLQGGVGSGG GDSTDTYLRK  120
RFRGDLFKDE QQTPPQHQEG GGGAGPSPPG ILPAAAMWAV APNSAAGGAF WMLPMSAGSA  180
APAVAAATGT IQAPLQFMSR QPTSGVAAQH LGLGTSETNL GMLAALNAYN RGGGLSMNSE  240
HHHPMDHHHQ AHTHQQQQSA DSDEDNHTMF FQLVKEYFHR FSFFYFCSIL LECCDFKNLI  300
CGSKWAARVG NKDLYRDPIR LCSIILCLFE REREREREEE RGQYTVCRCS PIKAISGRTF  360
LIRIVRGRTR GEGPCSSDPS HHVVSARR

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064240	3e-40	AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBank	AP003513	3e-40	AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBank	AP003569	3e-40	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	3e-40	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	3e-40	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009404879.1	1e-114	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	6e-50	TCP8_ARATH; Transcription factor TCP8
TrEMBL	M0T7Y2	0.0	M0T7Y2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P17840_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-30	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]