PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P17870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 446aa    MW: 49001.7 Da    PI: 6.7941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P17870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.82.3e-90704431374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            lv+lLl++A av++g +++a  +L +l  +as +gdpmqR+ ayf+ +Laar++ + s ly+++ + +t+    +ee+aa++ ++ +s
  GSMUA_Achr6P17870_001  70 LVHLLLAAAAAVDAGRASAAMDALVELYRHASLHGDPMQRVMAYFADGLAARILPEASPLYQSVMAPPTA----EEEFAAFTDLYRAS 153
                            68***********************************************************999888886....788899999***** PP

                   GRAS  89 PilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfA 169
                            P+++f+h+taNq+I+ea+e e      r+H+iDfd+s+G+QWp+L+q+L +++  ++p slR+Tg+g     s+eeleet+ rL  f+
  GSMUA_Achr6P17870_001 154 PYFQFAHFTANQTIMEAFEAEqqhngGRLHVIDFDVSYGFQWPSLIQSLCDKAttSSPISLRLTGFGG----STEELEETETRLVGFC 237
                            *******************9988888899*********************999856666*********....9*************** PP

                   GRAS 170 eel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.vvvvveqeadhnsesFle 255
                            + + +++f f+ l    l   + ++L+++++ +laVnlv+ l++l  +s        ++L  ++sl+P+ vvv+ve+e +++ +sFl+
  GSMUA_Achr6P17870_001 238 KGCsNLEFVFQGL----LRGSTANDLKIDKDATLAVNLVFYLQTLKTSSEM-----LATLMSIRSLNPRaVVVLVEKEDSRGPASFLA 316
                            98648*******8....77778899******************99844443.....457*********8567889************* PP

                   GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr. 342
                            r++++l+y++a+f sl+  lp+es er ++E+  lgrei+ +  ++  +   ++    +W+ r++++G++ ++ls++ ++qaklll+ 
  GSMUA_Achr6P17870_001 317 RMVDSLNYFAAMFHSLHDCLPAESTERLSIEKNHLGREIKAAMGKSSHQ---EKVGGPTWKGRMGSVGYRGMKLSSRSVSQAKLLLKi 401
                            ****************************************988777666...78889****************************982 PP

                   GRAS 343 ........kvksdgyrveee.sgslv.lgWkdrpLvsvSaWr 374
                                    +v++ g+ + e  +g+ + l+W+dr+L++vSaWr
  GSMUA_Achr6P17870_001 402 rshfssieHVSNSGFGIAEGdDGTTIsLCWQDRNLITVSAWR 443
                            222222212234455555434666667**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.9744412IPR005202Transcription factor GRAS
PfamPF035148.0E-8870443IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEEEGQGIGE ELLSLGLGVG STRRSNAAVG KRKAKDAEER KLLGLLQARE DMLRVDPRRS  60
GPEDKRDQRL VHLLLAAAAA VDAGRASAAM DALVELYRHA SLHGDPMQRV MAYFADGLAA  120
RILPEASPLY QSVMAPPTAE EEFAAFTDLY RASPYFQFAH FTANQTIMEA FEAEQQHNGG  180
RLHVIDFDVS YGFQWPSLIQ SLCDKATTSS PISLRLTGFG GSTEELEETE TRLVGFCKGC  240
SNLEFVFQGL LRGSTANDLK IDKDATLAVN LVFYLQTLKT SSEMLATLMS IRSLNPRAVV  300
VLVEKEDSRG PASFLARMVD SLNYFAAMFH SLHDCLPAES TERLSIEKNH LGREIKAAMG  360
KSSHQEKVGG PTWKGRMGSV GYRGMKLSSR SVSQAKLLLK IRSHFSSIEH VSNSGFGIAE  420
GDDGTTISLC WQDRNLITVS AWRCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-457844227378Protein SCARECROW
5b3h_A2e-457844226377Protein SCARECROW
5b3h_D2e-457844226377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682606.10.0PREDICTED: scarecrow-like protein 23
TrEMBLM0T7Y50.0M0T7Y5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P17870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.15e-37GRAS family protein