PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P17990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 257aa    MW: 28337.3 Da    PI: 7.6132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P17990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-053456223
                           EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                           +CpdCg+ F  +++L  H+r  H
  GSMUA_Achr6P17990_001 34 PCPDCGEIFMKPDDLDLHQRAmH 56
                           6*******************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2633361IPR007087Zinc finger, C2H2
PROSITE patternPS0002803556IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-1860255No hitNo description
Gene3DG3DSA:3.90.228.104.7E-1260255IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MHLRGFSGCY ECHLTADPLI GPSRDASTRL TISPCPDCGE IFMKPDDLDL HQRAMHAASE  60
LSAEDTSRKI IEIIFRSSWL DKQASICKID RILKVHNTQK TISRFEDYRD SIKSSCNRLQ  120
NKHPRCVADG NELLRFHCTT LACSLGLDGS TNLCRSIPRC SVCSILRDGF GVDEFGKIQT  180
MATSGGAHAA AQVSSEGEKR AMLVCRVIAG RVKKSRDATE EYDSVAGPAA THSNLDELFV  240
FHPNAILPCF VVLYRGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404894.10.0PREDICTED: uncharacterized protein LOC103988098
RefseqXP_018682493.10.0PREDICTED: uncharacterized protein LOC103988098
TrEMBLM0T7Z70.0M0T7Z7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P17990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-81C2H2-like zinc finger protein