PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P18020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 265aa    MW: 28361.5 Da    PI: 8.8101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P18020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2087137256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                            +++GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  GSMUA_Achr6P18020_001  87 RFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRGN 137
                            79*******.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-3286146No hitNo description
Gene3DG3DSA:3.30.730.101.0E-3287145IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2287145IPR016177DNA-binding domain
PROSITE profilePS5103225.14687144IPR001471AP2/ERF domain
PfamPF008472.6E-1487136IPR001471AP2/ERF domain
SMARTSM003801.0E-3587150IPR001471AP2/ERF domain
PRINTSPR003671.4E-118899IPR001471AP2/ERF domain
PRINTSPR003671.4E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSVMVSTLTR VVAGEDGASL PSLPSSGEQN GGGRQMQGRE SFVHEEVPRF CITFGSSPGG  60
SSSSSASAAG SSTRAVHFCS SQGGRKRFRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA  120
ESAARAYDEA ALRFRGNRAK LNFPEDAGVR QAPAAAPSAA PAALLESRPF DAMRDYWEYS  180
RLLQGAEDGR GMPPPALLDE TVSCRANNPA SPLTAAAAAS GHPLSPLLYP PASEQQMDYL  240
QLPPWTESSH YPPSSSQYRH AKTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2386144463ATERF1
3gcc_A6e-2386144463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389GRKRFRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682388.11e-144PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
TrEMBLM0T8000.0M0T800_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P18020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-30ethylene response factor 110