PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P18640_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 192aa MW: 21424.2 Da PI: 5.2791

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P18640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.4	4.2e-34	4	121	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGf+F Ptdeelvv++L +k+++ +++ +v++ +d+ +++Pw+L+ k+ ++ +++yfFs++ n++ sgyW a g GSMUA_Achr6P18640_001 4 LPPGFQFFPTDEELVVHFLYRKASRLPCQP-DVVPFLDLRRFDPWQLNGKALQGGNHCYFFSHAT--------VNKVSPSGYWMAVGA 82 79***********************999.99**********977778899**974........577899***** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++v+s ++++vg+k+tLvf+ g+ap g+kt+Wvmheyrl GSMUA_Achr6P18640_001 83 KETVTS-GDKDVGTKTTLVFHIGEAPLGVKTSWVMHEYRL 121 *9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-42	2	126	IPR003441	NAC domain
PROSITE profile	PS51005	37.781	4	162	IPR003441	NAC domain
Pfam	PF02365	1.4E-21	5	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSDLPPGFQF FPTDEELVVH FLYRKASRLP CQPDVVPFLD LRRFDPWQLN GKALQGGNHC 60 YFFSHATVNK VSPSGYWMAV GAKETVTSGD KDVGTKTTLV FHIGEAPLGV KTSWVMHEYR 120 LLEDGAAVPS SRTNRNSSSS ASRARGNKRP DLNLAICRVQ EASFFGVEET ELSCLDEVFL 180 SLDDLDEISM PY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-36	4	123	20	147	NAC domain-containing protein 19
3swm_B	8e-36	4	123	20	147	NAC domain-containing protein 19
3swm_C	8e-36	4	123	20	147	NAC domain-containing protein 19
3swm_D	8e-36	4	123	20	147	NAC domain-containing protein 19
3swp_A	8e-36	4	123	20	147	NAC domain-containing protein 19
3swp_B	8e-36	4	123	20	147	NAC domain-containing protein 19
3swp_C	8e-36	4	123	20	147	NAC domain-containing protein 19
3swp_D	8e-36	4	123	20	147	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009404964.1	1e-143	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-52	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	M0T862	1e-142	M0T862_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P18640_001	1e-142	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-53	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]