PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P19060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 226aa    MW: 25087.5 Da    PI: 9.808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P19060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002153174323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            C+ C + F r+++L+ H  + H
  GSMUA_Achr6P19060_001 153 CHSCREQFGRWEDLEAHHLSkH 174
                            *****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280153174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPTLWITLKK SLHSKSGNSD VHELKGRSHL GTLLRRKRSR SCCSRSIADL GDVIHGARRQ  60
MEKPNCSSPR SIGSSGVLNP IAHEVVLSDT RCELKIATGP ERRSTTALRK VTYIFADRQG  120
YSSLSDAVLG NAGADHASLK VWPSTGHSSP SLCHSCREQF GRWEDLEAHH LSKHAVSELL  180
EGDSSRKIVE IICKASWSKF ESSCGRLQRV LKVHNMQKTL TQSEEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260321e-127AC226032.1 Musa acuminata clone BAC MA4-12B6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683385.11e-118PREDICTED: uncharacterized protein LOC108953174
TrEMBLM0T8A41e-164M0T8A4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P19060_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.15e-58C2H2 family protein