PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P19400_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 245aa MW: 27559.8 Da PI: 7.0224

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P19400_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141	7.1e-44	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppG+rF Pt+eel+ +yL++k+e+++ ++e+vi+ +d+y ++Pw+Lp + ++++ ++w+fF++r++++a+g r++r+t sgyWk GSMUA_Achr6P19400_001 4 VPPGYRFYPTEEELIGFYLQNKLENRREDMEQVIPVADMYCFDPWQLPpMsgePCRGDGEQWFFFCPRQEREARGGRPTRTTPSGYWK 91 69**************************99***********9545554455888************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ v+s+ ++++g+k+t+vf++grap g+kt+W m+eyr+ GSMUA_Achr6P19400_001 92 ATGSPSLVYSSANRVMGVKRTMVFHQGRAPVGTKTKWKMNEYRA 135 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-49	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	49.304	4	163	IPR003441	NAC domain
Pfam	PF02365	4.0E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSTVPPGYRF YPTEEELIGF YLQNKLENRR EDMEQVIPVA DMYCFDPWQL PPMSGEPCRG 60 DGEQWFFFCP RQEREARGGR PTRTTPSGYW KATGSPSLVY SSANRVMGVK RTMVFHQGRA 120 PVGTKTKWKM NEYRAVEEGG SSIIASLAPQ PRSEYSLCRV YTKSGCIRSF DRRPSSSSSS 180 SAAAAAATNI DAQRTPEVLP SLCVPASANR PPSYGDSSRR SEGQRGEDDL WLITDDECYS 240 LQDWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	3	163	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	3	163	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	3	163	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	3	163	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	3	163	19	168	NAC domain-containing protein 19
3swm_B	2e-35	3	163	19	168	NAC domain-containing protein 19
3swm_C	2e-35	3	163	19	168	NAC domain-containing protein 19
3swm_D	2e-35	3	163	19	168	NAC domain-containing protein 19
3swp_A	2e-35	3	163	19	168	NAC domain-containing protein 19
3swp_B	2e-35	3	163	19	168	NAC domain-containing protein 19
3swp_C	2e-35	3	163	19	168	NAC domain-containing protein 19
3swp_D	2e-35	3	163	19	168	NAC domain-containing protein 19
4dul_A	1e-35	3	163	16	165	NAC domain-containing protein 19
4dul_B	1e-35	3	163	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405460.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-73	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M0T8D8	0.0	M0T8D8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P19400_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-75	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]