PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P19410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 157aa MW: 18259.8 Da PI: 10.6877

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P19410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4e-15	86	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++++ +++G+g+Wk I+r k+Rt+ q+ s+ qk+ GSMUA_Achr6P19410_001 86 PWTEDEHRLFLEGLAKYGKGDWKNISRWAVKTRTPTQVASHAQKF 130 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.004	19	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.59E-12	21	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-5	21	66	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.748	22	69	IPR017877	Myb-like domain
CDD	cd00167	4.46E-4	22	60	No hit	No description
PROSITE profile	PS51294	18.564	79	135	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-18	81	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-17	83	134	IPR006447	Myb domain, plants
SMART	SM00717	5.0E-10	83	133	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-11	85	126	IPR009057	Homeodomain-like
CDD	cd00167	5.84E-10	86	131	No hit	No description
Pfam	PF00249	1.5E-11	86	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MGERELMSVF SRQFVVAAAP RPWTREEDKV FERALLVYPE GTPSRWFAIA AQLVGRSTVE 60 AWGRYQALVE DCHMIERGME RRRGVPWTED EHRLFLEGLA KYGKGDWKNI SRWAVKTRTP 120 TQVASHAQKF FIRQNQNNGG KNRDTKRKSI HDITKIG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405310.1	1e-106	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-37	DIV_ANTMA; Transcription factor DIVARICATA
Swissprot	Q9FNN6	2e-37	SRM1_ARATH; Transcription factor SRM1
TrEMBL	M0T8D9	1e-113	M0T8D9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P19410_001	1e-114	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2895	36	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	3e-44	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]