PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P19530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 247aa MW: 27446.5 Da PI: 6.1132

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P19530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.6	9.8e-37	22	77	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 a +cprC s++tkfCyynnyslsqPryfCkaCrryWtkGG+lrnvP+G+g rk+++ GSMUA_Achr6P19530_001 22 ANSCPRCGSSDTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPIGSGYRKSRR 77 578**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.931	23	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-19	25	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLSSHHDMLP CTPPQPVDVE LANSCPRCGS SDTKFCYYNN YSLSQPRYFC KACRRYWTKG 60 GSLRNVPIGS GYRKSRRGRS SARLSSAVSV AAGGPDANSN RRAPQSPIRP DLLTNEVAAP 120 IAINLEALYA KYMNRSPEME SGVAIAAFDT ETTSRSSSCH CQMFSPVGDT TPLNQVNDRP 180 FGNGDYNLYR ELSRSITLPV EPVQSYISLD CQEEFESTTA CSMDHQQDRA NIDDWSLLDY 240 SSLEAFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405324.2	0.0	PREDICTED: dof zinc finger protein DOF1.2-like
Swissprot	Q9SVC5	1e-33	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	M0T8F1	0.0	M0T8F1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P19530_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-27	Dof family protein