PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P20870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 223aa    MW: 25491.9 Da    PI: 8.4638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P20870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.36.6e-45151361128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtde+lvv+yLk+kv + +l++ ++i+e+d+ k++Pw+Lp       +e y F +r+ ky++gkr+nra++sgyWka gk
  GSMUA_Achr6P20870_001  15 LPPGFRFHPTDEDLVVQYLKRKVFSCPLPA-SIIPEIDLGKYDPWNLP------GDERYCFNRREAKYPNGKRSNRAARSGYWKARGK 95 
                            79****************************.89**************9......4689****************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++++  +++vg++++Lvfy+g+ p+++ tdW+mheyrl
  GSMUA_Achr6P20870_001  96 DKQIVASgCNQVVGMRRVLVFYRGKPPTSSPTDWMMHEYRL 136
                            *****9977889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-538160IPR003441NAC domain
PROSITE profilePS5100552.99515161IPR003441NAC domain
PfamPF023655.6E-2516136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSHKPSLVRF GALRLPPGFR FHPTDEDLVV QYLKRKVFSC PLPASIIPEI DLGKYDPWNL  60
PGDERYCFNR REAKYPNGKR SNRAARSGYW KARGKDKQIV ASGCNQVVGM RRVLVFYRGK  120
PPTSSPTDWM MHEYRLAGSD GRSLGLMIPS QDWVLCRIFK RRRAPIVVDE EEDIITNDVT  180
DFRDFMDERE GDPTPSSSSS PEKSCVTELF DESSRGEETN SPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-461316215166NO APICAL MERISTEM PROTEIN
1ut4_B7e-461316215166NO APICAL MERISTEM PROTEIN
1ut7_A7e-461316215166NO APICAL MERISTEM PROTEIN
1ut7_B7e-461316215166NO APICAL MERISTEM PROTEIN
3swm_A8e-461316218169NAC domain-containing protein 19
3swm_B8e-461316218169NAC domain-containing protein 19
3swm_C8e-461316218169NAC domain-containing protein 19
3swm_D8e-461316218169NAC domain-containing protein 19
3swp_A8e-461316218169NAC domain-containing protein 19
3swp_B8e-461316218169NAC domain-containing protein 19
3swp_C8e-461316218169NAC domain-containing protein 19
3swp_D8e-461316218169NAC domain-containing protein 19
4dul_A7e-461316215166NAC domain-containing protein 19
4dul_B7e-461316215166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405516.11e-154PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-73NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM0T8T51e-164M0T8T5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P20870_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-75NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]