PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P21380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 237aa    MW: 26379.8 Da    PI: 8.8166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P21380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025163185123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C  Cgk F  + + ++H +++
  GSMUA_Achr6P21380_001 163 FACRRCGKAFAVRGDWRTHEKNC 185
                            78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5149183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.12E-6149183No hitNo description
PROSITE profilePS501578.787163183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MHFNTNDQEE DNTVLLLSLW PPGSQSSPAS SSCSSSTSTF VASNTAATTA AGLNLVPSSY  60
WIPSPAEILV SATQFSCTVS NKTFNRFNNM QMHMWGHGSQ YRRGSESPRG IPRQLPSPCL  120
LKLPCYCCAE GCKNNIEHPR SRPLKDFRTL QTHYKRKHGV RPFACRRCGK AFAVRGDWRT  180
HEKNCGKLWF CICGSDFKHK RSLKDHVRSF GSGHAPHIAE TMSIDEEVGV IEGKDGD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9503261e-121AM950326.1 Musa acuminata subsp. burmannicoides microsatellite DNA, clone 7ZH12RM1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405574.21e-153PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX683e-94ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLM0T8Y61e-178M0T8Y6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P21380_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-94C2H2-like zinc finger protein