PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P21490_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 651aa MW: 72923.5 Da PI: 5.3895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P21490_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.4	7e-15	468	513	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eYI +L GSMUA_Achr6P21490_001 468 NHVLAERRRREKLNERFMVLRSLVPFV-----TKMDKASILGDTIEYIEQL 513 7999********************8.....8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	9.7E-57	9	191	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.587	464	513	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-19	465	530	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-19	468	528	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-12	468	513	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.02E-16	468	518	No hit	No description
SMART	SM00353	3.5E-18	470	519	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MVAPPSTGLQ QALQAVVQSV HWTYSLFWQV CPQQGTLVWG DGYYNGGIKT RKTVQPVEVS 60 TEEASLQRSQ QLRELFESLS SGEANLPARR PCAALSPEDL TEAEWFYLMC ISFSFPPGVG 120 LPGKAFARQR HVWLTRANEV DSKAFSRAIL AKSAHVQTVV CIPLMDGVLE LGNIEKVEED 180 MALIQHAKRF FTDYFDVHTK PALSEQSASN QFASADHALY HQQAPIIHQM NMETHASNQE 240 EDDAHDHNED YNDDDDDDGD DDGDGSCRSE LKGMRYGVDV SMHHPAVAAA AAAAEEEEAS 300 ELMQLEMSED IRVGSVSDCS NNLDVEHMPD GESKKQRQDH DFSKNWHFLL EDLGNGFGFQ 360 QSLGTQVQDF SSEDAHYSET VSSILRHNMN RWVDASSFSY LVRSHNSAFS MWSCKRDHTV 420 SSQGSSQWLL KSVLLNIRDR LCKLGDGRDG EGGNKLQKCA TQEEVSANHV LAERRRREKL 480 NERFMVLRSL VPFVTKMDKA SILGDTIEYI EQLRRRIQDL EGRNRQQSSK RQCGSQVGNC 540 KLDVQRRVGL SADKRKLQVL EGSNGMATTS VHVSMAEADA LLELHCPCRD GLLLDIMQTL 600 HELGLEVSSL QCSSTNGVFG AEMRSKMKEA YGRRVDIVEL KKAIHQIISD H

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MVAPPSTGLQ QALQAVVQSV HWTYSLFWQV CPQQGTLVWG DGYYNGGIKT RKTVQPVEVS  60
TEEASLQRSQ QLRELFESLS SGEANLPARR PCAALSPEDL TEAEWFYLMC ISFSFPPGVG  120
LPGKAFARQR HVWLTRANEV DSKAFSRAIL AKSAHVQTVV CIPLMDGVLE LGNIEKVEED  180
MALIQHAKRF FTDYFDVHTK PALSEQSASN QFASADHALY HQQAPIIHQM NMETHASNQE  240
EDDAHDHNED YNDDDDDDGD DDGDGSCRSE LKGMRYGVDV SMHHPAVAAA AAAAEEEEAS  300
ELMQLEMSED IRVGSVSDCS NNLDVEHMPD GESKKQRQDH DFSKNWHFLL EDLGNGFGFQ  360
QSLGTQVQDF SSEDAHYSET VSSILRHNMN RWVDASSFSY LVRSHNSAFS MWSCKRDHTV  420
SSQGSSQWLL KSVLLNIRDR LCKLGDGRDG EGGNKLQKCA TQEEVSANHV LAERRRREKL  480
NERFMVLRSL VPFVTKMDKA SILGDTIEYI EQLRRRIQDL EGRNRQQSSK RQCGSQVGNC  540
KLDVQRRVGL SADKRKLQVL EGSNGMATTS VHVSMAEADA LLELHCPCRD GLLLDIMQTL  600
HELGLEVSSL QCSSTNGVFG AEMRSKMKEA YGRRVDIVEL KKAIHQIISD H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-23	9	191	9	192	Transcription factor MYC3
4rqw_B	1e-23	9	191	9	192	Transcription factor MYC3
4rs9_A	1e-23	9	191	9	192	Transcription factor MYC3
4yz6_A	1e-23	9	191	9	192	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	477	ERRRRE
2	473	478	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405587.1	0.0	PREDICTED: basic helix-loop-helix protein A-like isoform X1
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	M0T8Z7	0.0	M0T8Z7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P21490_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8863	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	9e-91	bHLH family protein

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001]