PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P21590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 300aa    MW: 31777.3 Da    PI: 6.4398
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P21590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06447542
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            C+ +e  e+   C  ++  lC  C ++ H        H++vpl
  GSMUA_Achr6P21590_001  4 QCNACEAAEAAVLCCADEAALCWACDEKVHAAnrlagkHQRVPL 47
                           7******99*********************66789999999986 PP
2zf-B_box29.81.2e-0967107337
               zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                             +kC+ ++e    +fC +++ llC++C l++H        H
  GSMUA_Achr6P21590_001  67 VPKCDICQEASGYFFCLEDRALLCRKCDLSIHTAnsyvsaH 107
                            589*****************************554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
SMARTSM003362.9E-9447IPR000315B-box-type zinc finger
PfamPF006434.1E-5447IPR000315B-box-type zinc finger
CDDcd000216.36E-41547No hitNo description
SMARTSM003364.4E-1665112IPR000315B-box-type zinc finger
PROSITE profilePS501199.05865112IPR000315B-box-type zinc finger
PfamPF006432.8E-767107IPR000315B-box-type zinc finger
CDDcd000219.66E-968112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKIQCNACEA AEAAVLCCAD EAALCWACDE KVHAANRLAG KHQRVPLLSD DGGGPVSGSS  60
SSTASGVPKC DICQEASGYF FCLEDRALLC RKCDLSIHTA NSYVSAHQRF LLTGVRVGLE  120
SAESVPVANQ QLHAAGKAVL SPSKQLRLMS STETNAVSSS QIARVGGSVA SMAPASGFSM  180
SGSAPGWPFD EFFGFPDINQ NGFAEHNASK ADSGKLGSHG SSPPYHSVDS DLDAYECVGQ  240
HPEYYWAVPE IPSPPTASGL GWQRNLLHPA SDDAAFVPDL CSSSHHVTTS FRSHRHHRRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405603.10.0PREDICTED: B-box zinc finger protein 23
TrEMBLM0T9070.0M0T907_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P21590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-57light-regulated zinc finger protein 1