PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P22130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 89aa    MW: 10006.1 Da    PI: 7.5093
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P22130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09853245
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                            +WTt   + + +a + +  g   +W++Iar +g g+t  +++ ++ 
  GSMUA_Achr6P22130_001  8 SSWTTKQNKMFEKALAVFDEGtpdRWHKIARAVG-GKTSDEVRRHYE 53
                           58*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.3E-7658IPR001005SANT/Myb domain
PROSITE profilePS500906.435856IPR017877Myb-like domain
SuperFamilySSF466895.06E-13863IPR009057Homeodomain-like
PfamPF002491.6E-6853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-4965IPR009057Homeodomain-like
CDDcd001676.16E-7956No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASGSVTSSW TTKQNKMFEK ALAVFDEGTP DRWHKIARAV GGKTSDEVRR HYELLVEDLR  60
RIEKGHFSYA DCPSSGNSSN LFDSTYCIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2210761177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405682.21e-53PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-27RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ6NNN03e-27RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLM0T9619e-61M0T961_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P22130_0012e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-30RAD-like 6