PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P22760_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 273aa MW: 30134 Da PI: 8.0049

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P22760_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	245	267	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H GSMUA_Achr6P22760_001 245 VCPKCSKGFRDPVALVEHVEKdH 267 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	1.18E-12	4	58	No hit	No description
PROSITE profile	PS51039	7.416	10	59	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	3.5E-11	11	52	IPR000058	Zinc finger, AN1-type
SMART	SM00154	7.4E-5	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.2E-13	13	51	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	2.16E-9	88	145	No hit	No description
Gene3D	G3DSA:4.10.1110.10	4.6E-11	91	150	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.774	98	151	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.03	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	6.9E-9	101	141	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	8.517	244	272	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	246	267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGTPEFPDLG KHCSVDDCRQ IDFLPFTCDR CNQVFCLQHR SYISHQCLNA SQKDVTVLIC 60 PLCAMGVRLV RDEDPNITWE LHVNTDCDPS NYQRATKKRR CPVPGCKEIL NLSNSIRCSD 120 CTQEHCLKHR FGPDHKCPGP KKLNSSFPFI GLLNRSQKGK SLQSSSSSSS SWWGASLMNA 180 VSNVRASAES GMLKFSDAAT QALQKAKNGI AESSNSGELM EHSEHAERSH QRSSQPAGNR 240 VTIDVCPKCS KGFRDPVALV EHVEKDHGGT SLT

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405739.1	0.0	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Swissprot	Q0D5B9	1e-128	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	M0T9C4	0.0	M0T9C4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P22760_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-105	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]