PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P24230_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 223aa MW: 23718.7 Da PI: 12.3373

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P24230_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.1	6.6e-31	27	78	5	57
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 rY+eCl+NhAa++Gg+++DGCgEfmp ge+g+ +alkCaACgCHRnFHRre GSMUA_Achr6P24230_001 27 RYRECLRNHAAAMGGQSYDGCGEFMPG-GEDGSLEALKCAACGCHRNFHRREG 78 8***********************9.999******************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-19	27	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.2E-28	27	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.2E-28	27	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.541	28	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDLSVVPYKG GSEEAAEAAG GGGGGGRYRE CLRNHAAAMG GQSYDGCGEF MPGGEDGSLE 60 ALKCAACGCH RNFHRREGIS LVQSPPPQPR RTVAAGWGRR RRRGARRQRP RRRGRGSGSA 120 PSSRRSRRRR CRPSRRSWGG ASRSRTTSRW TSSAFRSASS ATSSRSGCTT TRTTSPPPPP 180 PLPPTPLPPP PPLPLPQSLP PAMPPPPRPS GSSPTRMVHI VSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	129	RRRGRGSGSAPSSRRSRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0T9R9	1e-149	M0T9R9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P24230_001	1e-150	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	4e-25	homeobox protein 31