PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 422aa    MW: 46636 Da    PI: 5.2918
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.38.5e-95454152373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsev 87 
                            ++lLl+cA+av+++d++l+q++++ l+++as++gdp+qRl++ f++AL +r ++ +++      ps+t+  + ++ ++a++l  ++++
  GSMUA_Achr6P24300_001  45 EKLLLHCATAVEANDATLVQQVMWVLNNIASSHGDPNQRLTSWFLRALVTRASQFCPTAI----PSATTGLTRARPMTATELvgYVDL 128
                            689**************************************************9555555....33444444566667777778**** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeel 172
                            +P+++f++ +aN aIl+ v+g ++vH++Df+i +++QWp+L++aL+ Rpegpp lRiT  ++  s+    + ++ee+g +La+fA++ 
  GSMUA_Achr6P24300_001 129 TPWHRFGFTAANGAILKMVQGRRKVHVLDFSIYYCMQWPTLIDALSGRPEGPPLLRITMPSARPSVpphLNVSTEEIGLKLANFAKSR 216
                            **********************************************************9988666688788999************** PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                            +vp+ef+v+   +   l++++L +++gEal+Vn++  l +l++ s+  ++    rd++++l+ +l+P +v+v++++ad++s+++  r+
  GSMUA_Achr6P24300_001 217 DVPLEFHVF---ASCLLDPSSLGLREGEALVVNCQSWLRYLPEGSGRATDdlsSRDAFMELIHRLNPCLVTVTDEDADLDSARLTSRI 301
                            ********7...66889*************************999888777778********************************** PP

                   GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                            +++++y +  fd+le+ lp++s +r  +E+  +g++i+n++  eg+er er e+ ++ ++r+++aGF++ p++e++++++kll+ +++
  GSMUA_Achr6P24300_001 302 MSCFNYLWIPFDALETFLPKDSPQRLAYEAD-IGQKIENIIGFEGEERMERLESGARFSQRMTRAGFESFPFDEETVSEVKLLVDEHA 388
                            *******************************.******************************************************** PP

                   GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaW 373
                            s  + ++ e+++lvl+Wk+++ v+++aW
  GSMUA_Achr6P24300_001 389 SA-WGLKREEDTLVLTWKGHNSVFTTAW 415
                            55.899999******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.99118397IPR005202Transcription factor GRAS
PfamPF035143.0E-9245415IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRAELRGSTP GHVSVPDPNP FDTPHGSLSG ALKGCLGSLD GAGIEKLLLH CATAVEANDA  60
TLVQQVMWVL NNIASSHGDP NQRLTSWFLR ALVTRASQFC PTAIPSATTG LTRARPMTAT  120
ELVGYVDLTP WHRFGFTAAN GAILKMVQGR RKVHVLDFSI YYCMQWPTLI DALSGRPEGP  180
PLLRITMPSA RPSVPPHLNV STEEIGLKLA NFAKSRDVPL EFHVFASCLL DPSSLGLREG  240
EALVVNCQSW LRYLPEGSGR ATDDLSSRDA FMELIHRLNP CLVTVTDEDA DLDSARLTSR  300
IMSCFNYLWI PFDALETFLP KDSPQRLAYE ADIGQKIENI IGFEGEERME RLESGARFSQ  360
RMTRAGFESF PFDEETVSEV KLLVDEHASA WGLKREEDTL VLTWKGHNSV FTTAWVPSGY  420
DG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-5384184421Protein SHORT-ROOT
5b3h_E6e-5384184421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405926.10.0PREDICTED: scarecrow-like protein 32
TrEMBLM0T9S60.0M0T9S6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein