PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P25120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 222aa    MW: 25086.2 Da    PI: 5.9899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P25120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.79.3e-08961392159
                            -EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
                   WRKY  21 prsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                             +sY+rC ++   +Cp++k v+r ++  dp  ++++Y+ +H+++
  GSMUA_Achr6P25120_001  96 KKSYHRCIYHkdqDCPATKTVQRVDRdaDPPEFIVVYNMQHRCR 139
                            68******998889********98761267789********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.7E-691140IPR003657WRKY domain
PfamPF031063.6E-1095139IPR003657WRKY domain
SuperFamilySSF1182902.62E-795139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-895139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEHSNLLVST STDLSHCYHH LEIKVINEAH ELTRQLRAVL LPSLPAGSLA DLAREILDKI  60
IKSCSLAAFM LQSGGHGHQT SKQHGEGERP MLDGHKKSYH RCIYHKDQDC PATKTVQRVD  120
RDADPPEFIV VYNMQHRCRS SDRHIPFVME SAEASLVKNQ SRTDTPSDGD PQMTHLLLSD  180
EISNISLTPE QWNLDNDLDP VMSLFEFADA DPFYSSVLMN LR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407001.11e-159PREDICTED: probable WRKY transcription factor 70
TrEMBLM0TA081e-165M0TA08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P25120_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.27e-08WRKY DNA-binding protein 67