PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P25190_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 257aa MW: 27829.8 Da PI: 8.7714

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P25190_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	20	79	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek lkcprCds+ntkfCyynnyslsqPr+fC++CrryWtkGGalrnvPvGgg+rkn+ks GSMUA_Achr6P25190_001 20 PEKGLKCPRCDSSNTKFCYYNNYSLSQPRHFCRTCRRYWTKGGALRNVPVGGGCRKNNKS 79 67899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	15	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MADGLQSSGG CKSTATVRPP EKGLKCPRCD SSNTKFCYYN NYSLSQPRHF CRTCRRYWTK 60 GGALRNVPVG GGCRKNNKSK LQYAPAAPGV FSSNQFITFR DISHSATFSS AATPAVGAYN 120 EIGGNSSSAA NSGNIVSSVE SLSSINNDLH WKLQQQRLDM LLGGEAHKES RIYGPDQQKL 180 NSSRVAERPT DDVCEGSGSS NAYVSTWLLD SSYSMPPSTS IINSITNSST KSNCNINASY 240 WDGIPAWSDM PQFTTMP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407002.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	M0TA15	0.0	M0TA15_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P25190_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-35	TARGET OF MONOPTEROS 6