PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P25680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 231aa    MW: 25514.5 Da    PI: 9.5533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P25680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-2077126255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  GSMUA_Achr6P25680_001  77 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFTTAEAAARAYDEAALRFRG 126
                            8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3376135IPR001471AP2/ERF domain
PROSITE profilePS5103225.42277134IPR001471AP2/ERF domain
SMARTSM003802.4E-3877140IPR001471AP2/ERF domain
PfamPF008471.5E-1377126IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2277135IPR016177DNA-binding domain
CDDcd000181.38E-2077136No hitNo description
PRINTSPR003671.4E-117889IPR001471AP2/ERF domain
PRINTSPR003671.4E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAAIVSALRR VVAGDTAVDA PSFSPSRGGG RGGVIGYKRE PDELMGERAY KHHRAPAPVA  60
EATPSATPLA EEGESRKYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFTTA EAAARAYDEA  120
ALRFRGSRAK LNFPEDAPEH RPVTDSKSSM ASNCAGSSSS TDQHMGYLPQ ASWIESNQHR  180
PSSENPALYW NFLLGKRKKK KESEDEEINN LFVLIFFFLG GWGGCSDSYW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2374134263ATERF1
3gcc_A5e-2374134263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407011.11e-105PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLM0TA641e-170M0TA64_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P25680_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-29ethylene response factor 110