PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P26280_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 243aa MW: 26085.9 Da PI: 4.9896

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P26280_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.8e-18	59	110	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++aa+++ +g+ GSMUA_Achr6P26280_001 59 PVYHGVRMRA-WGKWVSEIRQPRK---KSRIWLGTFATPEMAARAHDAAALCVKGH 110 68***998.******843...6*********************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.2E-13	59	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.377	60	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-18	60	120	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-28	60	121	IPR001471	AP2/ERF domain
SMART	SM00380	5.0E-30	60	126	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-9	61	72	IPR001471	AP2/ERF domain
CDD	cd00018	4.28E-16	61	122	No hit	No description
PRINTS	PR00367	2.9E-9	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGLMADQMKW TSSESETSGN TAPTTSSSSS SSSSRSSSMA LKGGVTEQQK RGRDSRRHPV 60 YHGVRMRAWG KWVSEIRQPR KKSRIWLGTF ATPEMAARAH DAAALCVKGH GAAATILNFP 120 ELAGSLPRPA SLSPRDVREA ATRAAAMEPP GACGPASWSS SSEGPSPTPT DELGEIVELP 180 TLGEGLFDSA TLGDEFIFHD SVNSWAYPPP LIEVEEDKDF FPEPLWSQEG DNSTGWEALS 240 CGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-14	58	120	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406164.1	1e-177	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	4e-63	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	M0TAC3	1e-176	M0TAC3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P26280_001	1e-177	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-63	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]