PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P26840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 260aa    MW: 29140.9 Da    PI: 9.7621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P26840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-1422111187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                            +W++ e+ +L++a  ++  +l+rg+l++++W+ev++++  r++ f     r+ +qCk++++ l+k+yk +k++  +      s++++f
  GSMUA_Achr6P26840_001  22 CWSEGETSTLVDAWGDRYLELKRGNLRQKHWQEVADAVncRRGAFgrrpPRTDVQCKNRIDTLKKKYKIEKARVTS---AFASQWQFF 106
                            7***********************************999866666322256779*****************99997...57789**** PP

               trihelix  83 dqlea 87 
                            ++l+a
  GSMUA_Achr6P26840_001 107 SRLDA 111
                            **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-2720112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEGRETPPTR PPNPALPYRE DCWSEGETST LVDAWGDRYL ELKRGNLRQK HWQEVADAVN  60
CRRGAFGRRP PRTDVQCKNR IDTLKKKYKI EKARVTSAFA SQWQFFSRLD ALIGSAAAPP  120
AKKPSPSPPL ARRGAAISIS VDDSIFQRAA AAAAAAGDDN DEEDDLESPS GSSSRSGGGL  180
RMARGKEGDG IRELAKAIER FAEIYERVEG AKQRQMMEME KKRMEFAKEL EFQRMQIFVD  240
SQVQLAKIKR AKRSDADGYM
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406235.11e-147PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0TAH90.0M0TAH9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P26840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-40sequence-specific DNA binding transcription factors