PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P26980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 2244aa MW: 250569 Da PI: 6.2949

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P26980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.3	3.9e-16	22	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le++++ + +ps++ r+e++ k+gL++rq ++WF+ rR k++k GSMUA_Achr6P26980_001 22 KRKMKTPYQLEILEKAYAVDTHPSETLRAEMSVKTGLSDRQLQMWFCHRRLKDRK 76 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-14	12	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-14	13	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.609	17	77	IPR001356	Homeobox domain
SMART	SM00389	3.3E-14	19	81	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-14	22	76	IPR001356	Homeobox domain
CDD	cd00086	4.38E-13	22	76	No hit	No description
PROSITE profile	PS50827	16.767	664	723	IPR018501	DDT domain
SMART	SM00571	6.1E-21	664	723	IPR018501	DDT domain
Pfam	PF02791	3.2E-17	666	720	IPR018501	DDT domain
Pfam	PF05066	6.4E-15	846	914	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-9	1067	1109	IPR028942	WHIM1 domain
Pfam	PF15613	2.1E-6	1241	1288	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2244 aa Download sequence Send to blast
MLTVINYYQE KPTPESGDKP PKRKMKTPYQ LEILEKAYAV DTHPSETLRA EMSVKTGLSD 60 RQLQMWFCHR RLKDRKLPPT RRQRRDEESL PLTPPPPVLP PQNDMPSSES GGVGLSSSPY 120 GSSVESRRAV SRAAAVVSRT GADMSAVGRQ YYDPVLPPPP THLNRLTMAE LRILASVEAQ 180 LGEPLRQDGP GLGVEFDPLP PGAFGAPIGI IIVFCLLILV VVVHANVACG NLIFSSLFAT 240 FSLLGGPCTG SYVWLQLLCP HIKIFLHSPT YLFFNILTEI SAQQKQPVWP YDGTVCGRHD 300 IKTTKASSFP SGIEHFSPSS SKGKRKPANG GSHTVHLHMG PRPLPEYRFL PEQPSVRSEA 360 YDMASQSHYY DSSIDVPNNR VTSVPSGGKN LHVNDQEAPS YTFQGQMSGA SLRSQQSRKQ 420 KIPSDLMEYG SAARSDSIPS PASDTQFHTN QVVGLENPHI SSDRTSRDEN ISWLGRKRKS 480 DEARTAKEEE AHQKRIRKEL EKQDNLRRKR EEQIQREIER HDRERRKEEE RMMREKQREE 540 ERFQREQRRE NERREKFLLK ESRRAEKLRQ KEELRRDKEA ARLKAATERA TARRIAKEYM 600 ELIEDERLEL MELAAANKGF SSIFALENET LQQLDSFRSM LTAFPPISVG LKKPFAIQPW 660 ADSDEKIANL LMVWKFLITF ADVLGLWPFT LDEFVQSLHD YDSRLLGEVH VALLKSIIKD 720 IEDVARTPAS TLGASQSSTV NPGGGHPQII EGAYAWGFNI RGWQRHLNYL TWPEILRQFA 780 LAAGFGPQLK KRNVDRVYSR DENEGNNGKD IISNLRNGLA AENAFALMKE RGYTHRRGSR 840 HRLTPGTVKF AAFHVLSLEG SNGLTILEVA DKIQNSGLRD LTTSKTPEAS IAAALSRDTK 900 LFERTAPSTY CVRSPYRKDP ADADAVLSAA REKIQVFLSA LSDSEEAEKD TEDVDEAERD 960 EDSEGDAADD PEVDDACIDA KLDKNDPFAS ELKDSMTLTL SCQEEGGENG VTACTSFGIV 1020 EKGPKMPSEK SKTVSTSGVS HLPDGNSNYI EASNLGMEDT EIDESNFGEP WVQGLSEGDY 1080 SELSVEERLH ALVALVGVAV EGNSIRIVLE ERLEAASALK KQMWAEAQLD KRRFKEECPG 1140 RLQGTAFSIN KAEAAVSNGA RVGSQMALDN VDKGNDGNLE AISNELFFEP NRVNFGNTSI 1200 GHELTTADVH PVHQHVYATE KSRSQLKAFI GHKAEQLYVY RSLPLGQDRR RNRYWQFSTS 1260 SSPNDPGSGR IFFESKDGHW RLIDSEEHLG PRQSLLGLVS ASSYFGTWHL FLMKETVRLL 1320 LLISLQISKY FSLLLLSNKA STLLFCLLEL INNRSQSNVN DEEYFLVLVN KILFRLVGVY 1380 NTLLAYALWP LGICNICSSI IHFFLQSHHL HGHPTHSSHY RSEPCTDRLS VWYVSIYQHM 1440 IQWDIPINRY VLSIPVPCQT GIYRSYRVVL LDTANHYYIL GLKPPWLLRS LFPLFQLLRL 1500 SVLFSTLHNG TVTFTSCTWN YNIIYILINN AFDALLAALD TRGIRESHLH SMLQRIESTF 1560 KEAIRRNKKF VSSDLVGDPV ITGLTKTSSS PDCSMELDSP SSSLCGLASD ALENSSSFRI 1620 ELGQSKAEIS AAVRRYQGLF RWMWKECYNP YQLCAMKYGK KRCSELLHTC DSCFQSFSAE 1680 ERHCPSCHKT FKAFHNSDAI FSEHMPLCEQ KRKSDPEWKL QVSDSSLSIG IRLLKAQLSM 1740 IEVSIPAEAL QAFWTEGYRK SWGVKLQSSS SAEELFQILT LLEGAIKRGV LSTTFETTAE 1800 LLSSANPGVA ADNNTAHSGS VPVLPWVPST SAAVALRLLD LDSSISYMLH PKLESHKGKE 1860 GDYITLPSCY VVVHDKQEVE SMGTPDQVDH QNEGRWLHLG RGGRGRSSRG RRGRGRGRGG 1920 RRLIGSGNSS RTELRTENNC SFEKATRKYT RRGRTRGQGH SRGRRTVRPR QRSENRVATI 1980 DKRSLLGSFV TASSSSKQCR IEASPESSDG EQWGIGETEK TYVEDDDSRP CLESGENGQA 2040 SGEDYDDQAV VSSDRDECDA DKPQGLVDDE TEDDLGDMEG DEEGEADDDY HNGNDLNTYM 2100 DDEDVEIGDN ADDVGDAEGN GDEDDDVAWS ASSEYTTPGS WRTASTSTTL MPKGNSTHSV 2160 PTSGGETLKD MSRTPAQELA AMATEDMVLG GAATDTAMPG KSTRAAKRTT FLDRPAAIVV 2220 ANDSPKHLVS ASVLMFESFS MFLS

Sequence ? help Back to Top

Protein Sequence Length: 2244 aa Download sequence Send to blast

MLTVINYYQE KPTPESGDKP PKRKMKTPYQ LEILEKAYAV DTHPSETLRA EMSVKTGLSD  60
RQLQMWFCHR RLKDRKLPPT RRQRRDEESL PLTPPPPVLP PQNDMPSSES GGVGLSSSPY  120
GSSVESRRAV SRAAAVVSRT GADMSAVGRQ YYDPVLPPPP THLNRLTMAE LRILASVEAQ  180
LGEPLRQDGP GLGVEFDPLP PGAFGAPIGI IIVFCLLILV VVVHANVACG NLIFSSLFAT  240
FSLLGGPCTG SYVWLQLLCP HIKIFLHSPT YLFFNILTEI SAQQKQPVWP YDGTVCGRHD  300
IKTTKASSFP SGIEHFSPSS SKGKRKPANG GSHTVHLHMG PRPLPEYRFL PEQPSVRSEA  360
YDMASQSHYY DSSIDVPNNR VTSVPSGGKN LHVNDQEAPS YTFQGQMSGA SLRSQQSRKQ  420
KIPSDLMEYG SAARSDSIPS PASDTQFHTN QVVGLENPHI SSDRTSRDEN ISWLGRKRKS  480
DEARTAKEEE AHQKRIRKEL EKQDNLRRKR EEQIQREIER HDRERRKEEE RMMREKQREE  540
ERFQREQRRE NERREKFLLK ESRRAEKLRQ KEELRRDKEA ARLKAATERA TARRIAKEYM  600
ELIEDERLEL MELAAANKGF SSIFALENET LQQLDSFRSM LTAFPPISVG LKKPFAIQPW  660
ADSDEKIANL LMVWKFLITF ADVLGLWPFT LDEFVQSLHD YDSRLLGEVH VALLKSIIKD  720
IEDVARTPAS TLGASQSSTV NPGGGHPQII EGAYAWGFNI RGWQRHLNYL TWPEILRQFA  780
LAAGFGPQLK KRNVDRVYSR DENEGNNGKD IISNLRNGLA AENAFALMKE RGYTHRRGSR  840
HRLTPGTVKF AAFHVLSLEG SNGLTILEVA DKIQNSGLRD LTTSKTPEAS IAAALSRDTK  900
LFERTAPSTY CVRSPYRKDP ADADAVLSAA REKIQVFLSA LSDSEEAEKD TEDVDEAERD  960
EDSEGDAADD PEVDDACIDA KLDKNDPFAS ELKDSMTLTL SCQEEGGENG VTACTSFGIV  1020
EKGPKMPSEK SKTVSTSGVS HLPDGNSNYI EASNLGMEDT EIDESNFGEP WVQGLSEGDY  1080
SELSVEERLH ALVALVGVAV EGNSIRIVLE ERLEAASALK KQMWAEAQLD KRRFKEECPG  1140
RLQGTAFSIN KAEAAVSNGA RVGSQMALDN VDKGNDGNLE AISNELFFEP NRVNFGNTSI  1200
GHELTTADVH PVHQHVYATE KSRSQLKAFI GHKAEQLYVY RSLPLGQDRR RNRYWQFSTS  1260
SSPNDPGSGR IFFESKDGHW RLIDSEEHLG PRQSLLGLVS ASSYFGTWHL FLMKETVRLL  1320
LLISLQISKY FSLLLLSNKA STLLFCLLEL INNRSQSNVN DEEYFLVLVN KILFRLVGVY  1380
NTLLAYALWP LGICNICSSI IHFFLQSHHL HGHPTHSSHY RSEPCTDRLS VWYVSIYQHM  1440
IQWDIPINRY VLSIPVPCQT GIYRSYRVVL LDTANHYYIL GLKPPWLLRS LFPLFQLLRL  1500
SVLFSTLHNG TVTFTSCTWN YNIIYILINN AFDALLAALD TRGIRESHLH SMLQRIESTF  1560
KEAIRRNKKF VSSDLVGDPV ITGLTKTSSS PDCSMELDSP SSSLCGLASD ALENSSSFRI  1620
ELGQSKAEIS AAVRRYQGLF RWMWKECYNP YQLCAMKYGK KRCSELLHTC DSCFQSFSAE  1680
ERHCPSCHKT FKAFHNSDAI FSEHMPLCEQ KRKSDPEWKL QVSDSSLSIG IRLLKAQLSM  1740
IEVSIPAEAL QAFWTEGYRK SWGVKLQSSS SAEELFQILT LLEGAIKRGV LSTTFETTAE  1800
LLSSANPGVA ADNNTAHSGS VPVLPWVPST SAAVALRLLD LDSSISYMLH PKLESHKGKE  1860
GDYITLPSCY VVVHDKQEVE SMGTPDQVDH QNEGRWLHLG RGGRGRSSRG RRGRGRGRGG  1920
RRLIGSGNSS RTELRTENNC SFEKATRKYT RRGRTRGQGH SRGRRTVRPR QRSENRVATI  1980
DKRSLLGSFV TASSSSKQCR IEASPESSDG EQWGIGETEK TYVEDDDSRP CLESGENGQA  2040
SGEDYDDQAV VSSDRDECDA DKPQGLVDDE TEDDLGDMEG DEEGEADDDY HNGNDLNTYM  2100
DDEDVEIGDN ADDVGDAEGN GDEDDDVAWS ASSEYTTPGS WRTASTSTTL MPKGNSTHSV  2160
PTSGGETLKD MSRTPAQELA AMATEDMVLG GAATDTAMPG KSTRAAKRTT FLDRPAAIVV  2220
ANDSPKHLVS ASVLMFESFS MFLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1908	1918	RGRRGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406256.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	M0TAJ3	0.0	M0TAJ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P26980_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator