PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 195aa    MW: 22479.2 Da    PI: 5.8503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-172471148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEd++lv+++  +G g W++ ar  g++Rt+k+c++rw++yl
  GSMUA_Achr6P27290_001 24 KGPWTMEEDLILVNYIGNHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 71
                           79********************************************97 PP
2Myb_DNA-binding49.78.4e-1677120146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T++E++l+ ++ +++G++ W++Iar m+ gRt++++k++w++
  GSMUA_Achr6P27290_001  77 RGNITAQEQLLIMELQARWGNR-WSKIARQMP-GRTDNEIKNYWRT 120
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7061971IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-221974IPR009057Homeodomain-like
SuperFamilySSF466897.11E-2921118IPR009057Homeodomain-like
SMARTSM007171.1E-112373IPR001005SANT/Myb domain
PfamPF002493.0E-152471IPR001005SANT/Myb domain
CDDcd001672.39E-92671No hitNo description
PROSITE profilePS5129423.26772126IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-2275127IPR009057Homeodomain-like
SMARTSM007179.4E-1376124IPR001005SANT/Myb domain
PfamPF002491.2E-1377120IPR001005SANT/Myb domain
CDDcd001676.96E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDGKGNSNMS NKSVNSGEEA DVRKGPWTME EDLILVNYIG NHGEGVWNSL ARSAGLKRTG  60
KSCRLRWLNY LRPDLRRGNI TAQEQLLIME LQARWGNRWS KIARQMPGRT DNEIKNYWRT  120
RIQKRVKQSD SPQFQNAILI DEANSSTSQT HIVDAGIVQP SLLDEPTIMN TDGIEPQFFI  180
DFDDNFWTFD ELWSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24211264108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406298.11e-144PREDICTED: myb-related protein 305-like
SwissprotP813919e-74MYB05_ANTMA; Myb-related protein 305
TrEMBLM0TAM41e-142M0TAM4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27290_0011e-143(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.14e-73myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]