PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P27520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 153aa MW: 17808.4 Da PI: 10.0004

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P27520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.4	6.6e-41	42	118	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dl +++eyhrrhkvCe hsk+pvv+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+++ GSMUA_Achr6P27520_001 42 CLVDGCRSDLRNCREYHRRHKVCELHSKTPVVMVGGVEQRFCQQCSRFHPLVEFDEVKRSCRKRLDGHNQRRRKPRS 118 9*************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-32	36	103	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.359	39	116	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.77E-38	40	119	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-31	42	115	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MSYIFACHFF QKLILHFPFV SSSGARKRAQ PPSTASRNRV WCLVDGCRSD LRNCREYHRR 60 HKVCELHSKT PVVMVGGVEQ RFCQQCSRFH PLVEFDEVKR SCRKRLDGHN QRRRKPRSEE 120 ASTASACLHP LPPGFIFSSL VSLSFNRTCD DYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-30	32	115	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407039.1	6e-80	PREDICTED: squamosa promoter-binding-like protein 16
Swissprot	B9DI20	1e-38	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	1e-38	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	M0TAP7	1e-109	M0TAP7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P27520_001	1e-109	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12961	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-41	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]