PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 411aa    MW: 45381.1 Da    PI: 8.0187
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.5e-092147127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C ++ rtG C++G +CkF+H+p
  GSMUA_Achr6P27550_001 21 PGEPDCAYYIRTGLCRFGMTCKFNHPP 47
                           5789*********************97 PP
2zf-CCCH38.91.4e-126892327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+++++tGtCk+G++CkF+H++
  GSMUA_Achr6P27550_001 68 QPECQYYLKTGTCKFGATCKFHHPR 92
                           799********************96 PP
3zf-CCCH37.44.3e-12114138327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C +++rtG+Ck+G++CkF+H++
  GSMUA_Achr6P27550_001 114 EKECAYYLRTGECKFGSTCKFHHPQ 138
                            679********************97 PP
4zf-CCCH38.81.6e-12271297127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+f+++tG Ck+G+ CkF+H++
  GSMUA_Achr6P27550_001 271 PGQPECQFYMKTGDCKFGAVCKFHHPR 297
                            5789*********************96 PP
5zf-CCCH38.22.4e-12317342126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ++++lC+f++r+G+Ck+G++Ck+ H+
  GSMUA_Achr6P27550_001 317 PGEPLCDFYSRYGICKFGPNCKYDHP 342
                            589**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00122047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5912048IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-62247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-52549IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-66592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4416593IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-57193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6111139IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413111139IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502270298IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5276298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6314342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601316344IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7316343IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10318342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4321341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MWKRNWRGSD SMESGPYPER PGEPDCAYYI RTGLCRFGMT CKFNHPPNRM LAVAATSIRG  60
GYPERVGQPE CQYYLKTGTC KFGATCKFHH PREKAGISEQ VQLNILGYPL RPNEKECAYY  120
LRTGECKFGS TCKFHHPQPS NAVLALHGSP VYPSAHSPTT PSQQTYPAEM TNWTLSRSSF  180
IPSPQWQASS SYAQLILPQG VVQVPGWTSY SGQLGSSPES QQTIGTAQFY SAPQQGETST  240
GAHGKFPSYR PGPVPVGMYA VPRENIFPER PGQPECQFYM KTGDCKFGAV CKFHHPRERL  300
VPVPNCVLSP LGLPLRPGEP LCDFYSRYGI CKFGPNCKYD HPIRTYTYGL SASSMAEVPT  360
AWHLSSILPE PSVLTLPLET AANGSSGVSR RISQSESQHA TAGDENDDEE S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406323.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM0TAQ00.0M0TAQ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1