PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 304aa    MW: 33260.3 Da    PI: 4.4802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-10119162755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + Er+RR r+++++ eLr+l+P+      +K++Ka+i   Av Y+k+Lq
  GSMUA_Achr6P27600_001 119 ISERKRRVRMKEKLYELRSLVPNI-----TKMDKASIIADAVVYMKNLQ 162
                            78*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510077.32574162IPR009056Cytochrome c-like domain
SuperFamilySSF474592.09E-16104176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-16114179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-13114164No hitNo description
PfamPF000102.4E-8118162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-12118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0009055Molecular Functionelectron carrier activity
GO:0020037Molecular Functionheme binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESDHPFLFA PQARISNEDD GFDPVFESYD HELLQFMLFD GGFAGDGHLS LLREGALFDA  60
GGHEGTTATQ YLQADAPSGS PDLSLEVDDD PPACGGCHDG GDSPGGITKT RRDRSKTLIS  120
ERKRRVRMKE KLYELRSLVP NITKMDKASI IADAVVYMKN LQSQAKKLEE EVSMLESSSR  180
EGQPLQVPSR KTTKATDLEE AAAVRGGNIM QVNAFEVGEG RFYVKVEGSM GDGAASSLYA  240
AVESLLCFDL ESSNFSLNPN GFVFTLTFKI GDFSREMNAS SMELWVMGAL LREGFQLMQT  300
TPPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407041.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLM0TAQ50.0M0TAQ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.14e-46FER-like regulator of iron uptake