PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P28550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 639aa    MW: 69158 Da    PI: 6.6156
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P28550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.2e-12254317155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.....kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g     ++  k +  g ++ +e+Aa+a++ a++k++g
  GSMUA_Achr6P28550_001 254 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtrkgRQgkKLVFAGGYDKEEKAARAYDLAALKYWG 317
                            57*******************6666744677662268*************************98 PP
2AP246.87.1e-15360411155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr6P28550_001 360 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 411
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-14254327IPR016177DNA-binding domain
PfamPF008473.2E-8254317IPR001471AP2/ERF domain
CDDcd000185.59E-19254327No hitNo description
PROSITE profilePS5103217.411255325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-13255326IPR001471AP2/ERF domain
SMARTSM003802.1E-23255331IPR001471AP2/ERF domain
PRINTSPR003673.2E-6256267IPR001471AP2/ERF domain
PfamPF008478.8E-10360411IPR001471AP2/ERF domain
CDDcd000187.94E-25360421No hitNo description
SuperFamilySSF541719.81E-18360421IPR016177DNA-binding domain
PROSITE profilePS5103219.045361419IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-18361420IPR001471AP2/ERF domain
SMARTSM003801.5E-33361425IPR001471AP2/ERF domain
PRINTSPR003673.2E-6401421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MNNWLGFSLS PQELPPPQAQ RIHPSPGIIS DDEVSADCYG LSPDSSSTPP LGIPTLRPDG  60
SFGILEALNR PCHHSQEYKG SSSELSMLVG SSSNQNTMDD QQPKLEDFLG GHSFAQHNQK  120
LPSIAGNYDN PSDYMYSHGC NSGGLLSSNG GCSSSSIGLS VIKTWLRNQP APPSQVEGNG  180
SDEAGCSNMN SSVGGAVAGN VGGTLTSSQS FGGGESSSSE NKQKDGNGSG LDAQSGAMEA  240
VPRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQGK KLVFAGGYDK  300
EEKAARAYDL AALKYWGTST TTNFPISNYE KELEEMKHMT RQEYVASLRR KSSGFSRGAS  360
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  420
SRYDVKAILE SSTLPIGGAA KRLKEISDHA EASVDGRMTD DGSITSHLTD TISSYGSHHH  480
GWPTIAFQQA QSLSFHYPYG QPRGWCKQEQ DSVVAAAHSL QDLQHLNLGS NTHNFFQPSM  540
IHNLMSLESN GNYNVDGTGG YVMPVSTMVV DQKDQGSSSY SESEGKQMAY ENMLAAGDPC  600
AGRSIYYLPQ QSTMQAPSAG GNNVTVCHGA PLFTVWNDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277291RREGQTRKGRQGKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406415.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLM0TB000.0M0TB00_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P28550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-129AP2 family protein