PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P28760_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 136aa MW: 14927 Da PI: 9.6578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P28760_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	39	74	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 d+i ++ ++L++l+ + +K + a++L +A+ YIk L GSMUA_Achr6P28760_001 39 DKIGERVSKLQQLVSPF-----GKSDTASVLSEATAYIKFL 74 57778888999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.369	25	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-10	26	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-7	35	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.42E-5	36	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MMMTEVVDHK RRGHDGFVLG NLSGEKRLKA AIGVQEKKDK IGERVSKLQQ LVSPFGKSDT 60 ASVLSEATAY IKFLHDQLQV LSAPYLQTTV TGEMEDGEHH SLRSRGLCLV PVASTRRIAQ 120 SNGADLWAPV NSNRSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406443.1	2e-95	PREDICTED: transcription factor bHLH113-like
Swissprot	Q7XJU2	7e-43	BH153_ARATH; Transcription factor bHLH153
TrEMBL	M0TB21	1e-96	M0TB21_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P28760_001	2e-97	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5272	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	3e-45	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]