PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P28870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 226aa    MW: 25146.7 Da    PI: 8.4071
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P28870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.72.8e-3372127359
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                            +vrY+eClkNhAas+Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e+e 
  GSMUA_Achr6P28870_001  72 AVRYRECLKNHAASIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKETEG 127
                            69**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-3073125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2474126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-3174124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.59475124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.17E-20147219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-31153220IPR009057Homeodomain-like
TIGRFAMsTIGR015655.9E-28158214IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDLSGHEGEI PIPITSAYVG GHGQTNMRDT PPIHHPSNGP PPPPPPLPIA TTEDHQRHHH  60
ATNSHSTKKG VAVRYRECLK NHAASIGGNA TDGCGEFMPS GEEGSLEALK CSACGCHRNF  120
HRKETEGDMI MPLGAIQTSE SDEMEGVGGM MPRPLMVKKR FRTKFTPEQK EKMLSFAEKV  180
GWKLQKQEES VVQQFCQEIG VKRRVLKVWM HNNKHHLAKK NPLQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241592151874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682799.11e-150PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S05e-73ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLM0TB321e-168M0TB32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P28870_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-72homeobox protein 31