PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P29060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Whirly

Protein Properties

Length: 233aa MW: 25811.5 Da PI: 10.0678

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P29060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	185	1.4e-57	55	192	2	139
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 +yk+kaal+v +v+ptf ++dsg ++ ++G ++l++ +a+++rkydW+kkq fals+tev++l+ l++ esceffhdp++k+s eG+ GSMUA_Achr6P29060_001 55 LYKGKAALSVSPVLPTFREVDSGVSRVYKKGCVILTFWPAVGVRKYDWQKKQAFALSPTEVGSLIGLGPAESCEFFHDPSMKSSLEGQ 142 7************************************************************************************* PP Whirly 90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v+k+l++ P+ d +G+++n+sv n+++k+ne+fsvPv+kaef+++r++l+ GSMUA_Achr6P29060_001 143 VKKSLSISPMKDKTGILLNFSVVNNIQKTNERFSVPVTKAEFTAIRTVLS 192 *********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	3.3E-66	43	211	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	2.98E-62	51	231	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	6.5E-58	55	190	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MRRTSRFLSC SSILERATNV KDSFWLTSQH SITTSGPDLV NDGSSSVRRK AEYALYKGKA 60 ALSVSPVLPT FREVDSGVSR VYKKGCVILT FWPAVGVRKY DWQKKQAFAL SPTEVGSLIG 120 LGPAESCEFF HDPSMKSSLE GQVKKSLSIS PMKDKTGILL NFSVVNNIQK TNERFSVPVT 180 KAEFTAIRTV LSYVLPHIMG WTQAASPQPP STATHTPKEQ IEERPDPSLE WGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4kop_A	5e-67	46	203	8	165	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B	5e-67	46	203	8	165	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C	5e-67	46	203	8	165	Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D	5e-67	46	203	8	165	Single-stranded DNA-binding protein WHY2, mitochondrial
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ637331	0.0	KJ637331.1 Musa acuminata AAA Group cultivar Tianbaojiao whirly transcription factor domain containing protein (WHY1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406472.1	1e-173	PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial-like isoform X2
Swissprot	D9J034	5e-67	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	M0TB51	1e-172	M0TB51_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P29060_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3012	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	5e-69	WHIRLY 2