PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P29730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 262aa    MW: 28625.4 Da    PI: 6.4424
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P29730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.6e-39101091100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk++rr+Ca+dC+la yfpa+qpk+f n h+lFG+sn+lk++++l++ e+ +am+s++yeA++r rdPv+G++g+i++l+ +++
  GSMUA_Achr6P29730_001  10 SCAACKYQRRRCAADCPLAAYFPADQPKQFLNCHRLFGVSNILKIINRLDPPEQAEAMKSIIYEANIRDRDPVHGCLGLIRSLHLHIH 97 
                            6*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l++el++++++
  GSMUA_Achr6P29730_001  98 HLEQELEATNSQ 109
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.4829110IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3810107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTVKGGTNQS CAACKYQRRR CAADCPLAAY FPADQPKQFL NCHRLFGVSN ILKIINRLDP  60
PEQAEAMKSI IYEANIRDRD PVHGCLGLIR SLHLHIHHLE QELEATNSQL LLHRHHQLAA  120
SSSSSSSTMI DGAASYLLLD NGISIVESCS IADNNDINMK AAERFWAHHS SALHAPMDDE  180
ISPSLDAIDE DGAYESRSNT CAHCLVRLPT ISITILMETA CSILSTSSES PLKDTMHSAM  240
AHVSRNELKS AAACFTLTSA VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3161247125LOB family transfactor Ramosa2.1
5ly0_B1e-3161247125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673497.15e-84PREDICTED: LOB domain-containing protein 27-like
TrEMBLM0TBB80.0M0TBB8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P29730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-41LOB domain-containing protein 27