PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 401aa    MW: 44607.2 Da    PI: 6.8175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15241287455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  GSMUA_Achr6P30080_001 241 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIGYMKSLQ 287
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20235303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.993237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-16240291No hitNo description
Gene3DG3DSA:4.10.280.108.7E-21241297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13241287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-18243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKQYAPNWSL VDQKKPMGLD SELVELLWQD MHVAMHTQSN HGASAINDES KPDQEPQCER  60
SLDRSAGLIQ VDETVSWLQY PLDDPPAKEF CSDFFSEMAG IGVIGVPTES TAFTATCPPR  120
PPQSCKAQAS SFGDGDASIC GSNQIHAQAD LSRDSAAAAT KGMPSETEQK HAYETTLTSS  180
SGGSDCSVRR MRKQIFGSNR SQKRRKRDAD DQSEEAEIES MEAKKLAQRS TATRRSRAAE  240
VHNLSERRRR DRINEKMKAL QELIPRCNKT DKASMLDEAI GYMKSLQLQV QMMWMGSAMA  300
QMMFPGVQQY MSHASVPWMH HAVQVPSVPV IHHSAGSYTN HLCLSPALHA ANFQNQMQGF  360
HVQESSYVPC HGFHHLQPHS QACSSIFTPL HLCLFAEITP M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682403.10.0PREDICTED: transcription factor PIF5-like
TrEMBLM0TBF30.0M0TBF3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.35e-43phytochrome interacting factor 3-like 5