PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 191aa    MW: 21095.9 Da    PI: 6.7941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-141056354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++h+e+ErrRR+riN  +++Lr++lP+      +K +Ka+ L ++++++k+L
  GSMUA_Achr6P30610_001 10 KSHSEAERRRRERINGHLAKLRSMLPNT-----TKTDKASLLAEVIQHVKEL 56
                           79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.717756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-41059No hitNo description
PfamPF000107.4E-121056IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-151166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-151166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-141362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.7891172IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.3E-693167No hitNo description
SuperFamilySSF550211.42E-593162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDAKALAASK SHSEAERRRR ERINGHLAKL RSMLPNTTKT DKASLLAEVI QHVKELKRQT  60
TEITEESPLP TEVDELTVDS TCDEDGKFIV RASLCCEDRP DLLPDLINAL KALRLRVLKA  120
EITTVGGRVK NVLAISEEQN SGDDDHQRLV TAIQEALKAV VEQTAKHDPS AGGTKRQRTA  180
SFPTIIEHSS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406646.11e-136PREDICTED: transcription factor bHLH30-like isoform X3
SwissprotQ9S7Y18e-69BH030_ARATH; Transcription factor bHLH30
TrEMBLM0TBK61e-135M0TBK6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30610_0011e-136(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]