PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 210aa    MW: 23663.3 Da    PI: 8.4812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-142467755
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            +Er RR+++N+++  Lr+++P+      +Kl+Ka+i + A++YI++Lq
  GSMUA_Achr6P30900_001 24 SMERSRRRKLNEKLYALRSVVPNI-----TKLDKASIIKDAIDYIQQLQ 67
                           69*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4821766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.65E-132071No hitNo description
SuperFamilySSF474592.75E-172182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-172372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-112467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-162483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSGGYCESSF PEAATSLAAT RNISMERSRR RKLNEKLYAL RSVVPNITKL DKASIIKDAI  60
DYIQQLQEQE RTVLAELSQL ESLREKKASL GELEFDDLHF LHRKKKRTAL GSPISSPIEV  120
VELRVREMDE KSMVVSITCT KKRHTMIKVC ELFESLDLKF ITANITSVSG SILHTLLVET  180
QEMNGAQLKE KITTAISELH GSRNPISSIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407095.11e-151PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-57BH035_ARATH; Transcription factor bHLH35
TrEMBLM0TBN51e-150M0TBN5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30900_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-60bHLH family protein