PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 188aa    MW: 21063.2 Da    PI: 9.2327
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2091.6e-6421552170
                  YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv.ek 88 
                            + + ++e++Cyv+CnfCntilavsvP + lf++vtvrCGhC++llsv++    ++l+ ++           ++   + +   + + ++
  GSMUA_Achr6P31080_001   2 SAQVAPEHICYVHCNFCNTILAVSVPGNKLFNMVTVRCGHCANLLSVHMGSVLHTLPLQDL----------QTYSIAPNGNPMEYgSS 79 
                            56789****************************************************9994..........33333333333333033 PP

                  YABBY  89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            ++ a+t   ++++++++++ +p     +rPPekrqrvPsaynrfikeeiqrika+nP+ish+eafsaaaknWahfP+ih g+
  GSMUA_Achr6P31080_001  80 SKYAMT-SLMYSMKNDRQQALP-----VRPPEKRQRVPSAYNRFIKEEIQRIKANNPNISHKEAFSAAAKNWAHFPHIHIGR 155
                            333333.334456777777777.....8***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-706154IPR006780YABBY protein
SuperFamilySSF470958.12E-991148IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-5102149IPR009071High mobility group box domain
CDDcd013906.43E-6109145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSAQVAPEHI CYVHCNFCNT ILAVSVPGNK LFNMVTVRCG HCANLLSVHM GSVLHTLPLQ  60
DLQTYSIAPN GNPMEYGSSS KYAMTSLMYS MKNDRQQALP VRPPEKRQRV PSAYNRFIKE  120
EIQRIKANNP NISHKEAFSA AAKNWAHFPH IHIGRNLDDN TQLRLEGGSG FARVPKGSEI  180
MMKDINLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406691.11e-141PREDICTED: protein YABBY 2-like
SwissprotQ10FZ71e-70YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0TBQ31e-140M0TBQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31080_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-63YABBY family protein