PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 123aa    MW: 13268.4 Da    PI: 8.5878
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.37.2e-10119725
                zf-LSD1  7 lLsYPrGApsVRCalCdtV 25
                           +L+Y  GA+sVRC++Cdt+
  GSMUA_Achr6P31340_001  1 MLMYANGATSVRCSCCDTM 19
                           69***************96 PP
2zf-LSD1352.4e-113356124
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                           C +C+ +L+YP+GAp V+Ca+C+ 
  GSMUA_Achr6P31340_001 33 CVQCHPILMYPYGAPCVKCAICNY 56
                           **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.7E-9121IPR005735Zinc finger, LSD1-type
PfamPF069438.4E-8118IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.8E-73058IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-103357IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MLMYANGATS VRCSCCDTMN MTGSANQVAH LNCVQCHPIL MYPYGAPCVK CAICNYITNA  60
GMHNMRFPIH VAHRPNEPTP VPPSTSPSSR ASNMTVVVEN PMSVNENGKL VSNVVVGVTT  120
RKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701999.12e-52protein LSD1
SwissprotQ2QMB34e-43LOL2_ORYSJ; Protein LOL2
TrEMBLM0TBS94e-84M0TBS9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31340_0017e-85(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-36LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]