PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 372aa    MW: 41316.9 Da    PI: 9.1011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.3e-17210256455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  GSMUA_Achr6P31370_001 210 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 256
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-21204272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.65E-17209260No hitNo description
Gene3DG3DSA:4.10.280.101.5E-21210265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-15210256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-19212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MHSQSQHHPR ASAAIAKLKP EQQQQREQSL GRSISSIQDD ATASWFPSPL HDSLEKEFCS  60
EFFSEMAGID GLGPSNMSTI DRYMGFGDTG ASDVLTAPKK STLHLRENNT MSSSICESNR  120
LHAQGDAAGV AGASVPKHAF ETALASSSGG ACFSFRRTGD QGGSGQCQKR KQRDVQVAEY  180
QSEEAEFESV EAKKAAQGSI STRRSRAAEV HNLSERRRRD RINEKMKALQ ELIPHCNKTD  240
KASMLDEAIE YLKSLQLQVQ MMWMGGRMAQ MMLPGAQQSM PGMAVGVGHA CVPLMHHALQ  300
SSTPNQTLSS TSPAFQAAMF RNLMQKHPQK WIWLIFNFIF RTPAITLMQR IWLFKSQECK  360
ISREQLLQIA PK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683663.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLM0TBT20.0M0TBT2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-38phytochrome interacting factor 3-like 5