PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 486aa    MW: 55083.8 Da    PI: 6.5179
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35141052102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+ye+++d+++++++sws +++sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  GSMUA_Achr6P31750_001  14 FLTKTYEMVDDPSTNSIVSWSPSNTSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKTDPDQ---------WEFTNDDFIRG 92 
                            9********************999****************************************9998.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll++i r+k 
  GSMUA_Achr6P31750_001  93 QRHLLQNIYRRKP 105
                            **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-39797IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-6510103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEGSRGSSNS PPPFLTKTYE MVDDPSTNSI VSWSPSNTSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKTDPD QWEFTNDDFI RGQRHLLQNI YRRKPVHSHS LHNQGNTSEA  120
ERQELEEEIE RLKQKKGTLL SEFQKQTQQR HGMEHQMQSL EDRLQVLENR QRSLMDFLAQ  180
IIQKPGFLSN IVQFSDLRSK KRRLPKIDFL GEDAIMEDNQ IASFQPVARE KSDILPMYAL  240
DMEPFEKMES SLNSLENFFK SVSQASGDDV CYDNIHSSPE VAESTSDAET SVIPATEIQT  300
DSQSKVSKID MNLAPAAIDI DSSRGQTTGT VAQTGANDVF WEQFLTEIPG SSETKEVQSK  360
RRDLDDKQSQ GEMGERGNTW CDRKNYCLFC RVQGVLKSVF VRGSPSVFGF SLGYRTRYSK  420
GCSCLLLRSA IELFVSITRY SLQIRISPHC RSTASRSIMQ SSSLAGAREG TLLGLVLLIP  480
NGHSAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-27310319129Heat shock factor protein 1
5d5v_B1e-27310319129Heat shock factor protein 1
5d5v_D1e-27310319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683306.10.0PREDICTED: heat stress transcription factor A-4b-like
SwissprotQ94J161e-123HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLM0TBX00.0M0TBX0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-83heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]