PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P32220_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 323aa MW: 35967.6 Da PI: 8.0395

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P32220_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+W+peLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl GSMUA_Achr6P32220_001 46 KPRLKWNPELHERFVEAVNQLGGADKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.026	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-31	44	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-16	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	4.8E-24	144	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MFQHQPHQGH NNLLSPRTTF PSERQLFLQR GNTTGEPGLV LSTDAKPRLK WNPELHERFV 60 EAVNQLGGAD KATPKTIMRL MGIPGLTLYH LKSHLQKYRL GKNLLAQTNT GSTKNVIGCT 120 LAAEKTSEGN GSSMNIAAPT NKTMQINEAL QMQIEVQRQL HEQLEVQRHL QLQIEAQGKY 180 LQSVLEKAQE TLGKQNLGSA GLEVAKFQLS ELVSKVSVDS CLTSSEGSQK EQDTHAAIMG 240 LRPQREIRDS GTVPEARKKD RDDEDMFLEH TSSKRAAVKQ ESRKQTDGFE LPCLTTDLEL 300 KIHEGSEGAS SCKKFDLNGF SWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018682688.1	0.0	PREDICTED: myb-related protein 2-like isoform X4
Swissprot	Q9SQQ9	1e-100	PHL9_ARATH; Myb-related protein 2
TrEMBL	M0TC16	0.0	M0TC16_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P32220_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-102	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]