PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 346aa    MW: 38197.1 Da    PI: 8.5075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-1866111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W ++Ed +l+d+v q+G+ +W++Ia++++ gR++k+c++rw++ 
  GSMUA_Achr6P32250_001  66 RGHWRPDEDAKLKDLVSQHGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 111
                            899*****************************.***********996 PP
2Myb_DNA-binding58.21.9e-18118161146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r+++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr6P32250_001 118 RDAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 161
                            789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.92561112IPR017930Myb domain
SMARTSM007171.0E-1465114IPR001005SANT/Myb domain
SuperFamilySSF466891.98E-2865159IPR009057Homeodomain-like
PfamPF002493.0E-1766111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2767119IPR009057Homeodomain-like
CDDcd001675.89E-1469110No hitNo description
PROSITE profilePS5129427.406113167IPR017930Myb domain
SMARTSM007179.2E-16117165IPR001005SANT/Myb domain
PfamPF002491.9E-15118160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20120166IPR009057Homeodomain-like
CDDcd001674.39E-8129160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGFLPPVAPP FVTGSTHGER ECWGFQGLAE GHGNHGDRRS NREGKEEEAG YGHVHGNERQ  60
HRPCARGHWR PDEDAKLKDL VSQHGPQNWN LIAEKLQGRS GKSCRLRWFN QLDPRINRDA  120
FSEEEEERLL AAHRLYGNKW ALIARLFPGR TDNAVKNHWH VIMARKQREQ SNACRRRRPS  180
ASSSIPSLPH SLPNRKEVNP SNNACSGEST ITSTRDESAS TCADLSLGSF TSRIVPSFPN  240
GYSPSHQPHS YQAFNGSDGK VVTTSNRIYV KHGDSGGSFF THGVPKMLVP GFDQSDCTGT  300
GSASGASANE AVVYHMTNNT LHHGETEHGG EKIRLPFFDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32661667107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0109621e-51FJ010962.2 Musa balbisiana microsatellite MbIIHR56 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406840.10.0PREDICTED: myb-related protein Zm1-like
TrEMBLM0TC190.0M0TC19_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-61myb domain protein 105