PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P32460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 326aa    MW: 35164 Da    PI: 7.0866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P32460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY741.9e-23153210259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgy+WrKYGqK++ +   +rsYYrCt++   gC++kkkv+r ++dp+++e++Y g+H+++
  GSMUA_Achr6P32460_001 153 DDGYTWRKYGQKDILN---SRSYYRCTHRsyyGCEAKKKVQRLDDDPNTFEVIYCGTHTCQ 210
                            8*************87...59*******99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-23144210IPR003657WRKY domain
SuperFamilySSF1182907.19E-22150211IPR003657WRKY domain
SMARTSM007747.9E-31152211IPR003657WRKY domain
PfamPF031061.7E-21153210IPR003657WRKY domain
PROSITE profilePS5081116.777153212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDILSQVFD ACRLARELET SLRLSNVPTD PHYLLGSCEE IVGAFNEAIR RLHAGNLSSY  60
PSQMLLGEAP GSRLDPGAGE GSSRGTGYMQ PRSGAERPLS GRRADGSLPH RSPRTRSAIG  120
ELIVTTRIAR MDDGTVTRRV PALRTGNMEM PPDDGYTWRK YGQKDILNSR SYYRCTHRSY  180
YGCEAKKKVQ RLDDDPNTFE VIYCGTHTCQ TSPTPILIPT LVPSAIGNNM NDNDNDDGGG  240
GGHQQGASPQ SASIQLRNWL EGNPRNTGTL LIPRSGAGGS TSRQVGQQQG GRDIDGSVAE  300
LADAMFNSAS SGSSMDAIFS PRQGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-17153210969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407111.20.0PREDICTED: WRKY transcription factor 55-like
TrEMBLM0TC400.0M0TC40_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P32460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-39WRKY DNA-binding protein 55